Package: seairmobility 0.1.0
seairmobility: Mobility-Based SEAIR Epidemic Models
Tools for simulating, analysing, and fitting mobility-based SEAIR (Susceptible-Exposed-Asymptomatic-Infectious-Recovered) compartmental epidemic models with heterogeneous individual mobility. Each individual carries a fixed mobility trait that scales susceptibility and infectiousness through a rank-one kernel, extending the mobility-based compartmental framework of Jiang et al. (2025) <doi:10.1137/24M1691557> by adding a latent stage and a behavioural split between asymptomatic and symptomatic infectiousness. Provides a numerical solver for the underlying partial differential equation system, closed-form computation of the basic reproduction number R0 and the final epidemic size, and a parametric least-squares routine for recovering the mobility distribution from an observed aggregate symptomatic time series.
Authors:
seairmobility_0.1.0.tar.gz
seairmobility_0.1.0.zip(r-4.7-any)seairmobility_0.1.0.zip(r-4.6-any)seairmobility_0.1.0.zip(r-4.5-any)
seairmobility_0.1.0.tgz(r-4.6-any)seairmobility_0.1.0.tgz(r-4.5-any)
seairmobility_0.1.0.tar.gz(r-4.7-any)seairmobility_0.1.0.tar.gz(r-4.6-any)
seairmobility_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
seairmobility/json (API)
| # Install 'seairmobility' in R: |
| install.packages('seairmobility', repos = c('https://wwang-math.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:c1161aaf46. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 92 | ||
| source / vignettes | OK | 133 | ||
| linux-release | OK | 89 | ||
| macos-release | OK | 163 | ||
| macos-oldrel | OK | 179 | ||
| windows-devel | OK | 66 | ||
| windows-release | OK | 63 | ||
| windows-oldrel | OK | 61 | ||
| wasm-release | OK | 72 |
Exports:beta_mixture_densityc_effectivefinal_sizefinal_size_generalfit_mobilityplot_seairR0_seairseair_aggregateseair_initseair_paramsseair_solve
Dependencies:deSolve
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| seairmobility: Mobility-Based SEAIR Epidemic Models | seairmobility-package seairmobility |
| Beta-mixture density on [0, 1] | beta_mixture_density |
| Effective infectiousness duration of the SEAIR chain | c_effective |
| Final epidemic size under the vanishing-seed regime | final_size |
| Final epidemic size under general proportional initial conditions | final_size_general |
| Fit a mobility distribution to an observed symptomatic time series | fit_mobility |
| Plot aggregate compartment trajectories | plot_seair |
| Basic reproduction number of the mobility-based SEAIR model | R0_seair |
| Aggregate a SEAIR solution over mobility | seair_aggregate |
| Build initial conditions for the SEAIR system | seair_init |
| Build a parameter list for the mobility-based SEAIR model | seair_params |
| Solve the mobility-based SEAIR system | seair_solve |